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Davide Risso

Dottorando XXIV Ciclo
Phd Student XXIV Cycle

Studio Office	129
Telefono Phone	+39 049 827 4123
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Dottorato Phd period	2009 - 2012
Formazione Education	January 2009 – present: PhD School in Statistical Sciences (XXIV cycle), Department of Statistical Sciences, University of Padova. March 2008: M. Sc. in Statistics and Computer Science, Faculty of Statistical Sciences, University of Padova. Thesis: Analisi dei dati di espressione genica: studio comparativo per la valutazione dell’impatto della normalizzazione sull’inferenza statistica (Analysis of gene expression data: a comparative study on the impact of normalization on statistical inference).[link] Supervisor: Dott. Chiara Romualdi. October 2005: B. Sc. in Statistics Mathematics and Data Management, Faculty of Mathematical Physical and Natural Science, University of Genova. Thesis: Statistical modelling dell’incidenza di episodi febbrili in pazienti pediatrici oncologici neutropenici. Supervisor: Prof. Vincenzo Fontana.
Ricerca Research	My research interests are: Statistical Modeling of high-throughput data (such as microarray data, high-throughput sequencing, …); Development of novel methods for RNA-Seq data analysis; Normalization of microarray data; Meta-analysis and pathway analysis in gene expression data; Computationally intensive statistical methods. Presentations: Intermediate seminar [pdf] Final presentation [pdf]
Soggiorni estero Visiting periods	August 2010 – present: Visiting Student Researcher at University of California, Berkeley, Graduate Group in Biostatistics. Advisor: Prof. Sandrine Dudoit. Project: Genome annotation and transcriptome analysis in Saccharomyces cerevisiae using mRNA-Seq.
Collaborazioni Professional experience	May 2008 – December 2008: Predoctoral Fellowship at CRIBI biotecnhology center, University of Padova. “Analisi e integrazione di dati di espressione per lo studio della plasticità muscolare”. Supervisors: Ing. Silvio Bicciato and Dott. Chiara Romualdi
Tesi Thesis	Thesis title: Simultaneous inference for RNA-Seq data Supervisor: Prof. Monica Chiogna Co-supervisors: Prof. Sandrine Dudoit (UC Berkeley), Dr. Chiara Romualdi
Pubblicazioni Publications	Technical Reports and Working Papers Risso D, Schwartz K, Sherlock G, Dudoit S (2011). GC-Content Normalization for RNA-Seq Data. Technical Report 291, Division of Biostatistics, University of California, Berkeley. [link] De Bin R, Risso D (2010). Clustering via nonparametric density estimation: an application to microarray data. Working Paper 3 – 2010, Department of Statistical Sciences, University of Padova. [link] Refereed Journals Pubblications Risso D, Schwartz K, Sherlock G, Dudoit S (2011). GC-Content Normalization for RNA-Seq Data. BMC Bioinformatics, 12:480. Highly accessed. [link] Martini P, Risso D, Sales G, Romualdi C, Lanfranchi G, Cagnin S. (2011). Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies. BMC Bioinformatics, 12(1):92. Highly accessed. [link] De Bin R, Risso D (2011). A novel approach to the clustering of microarray data via nonparametric density estimation. BMC Bioinformatics, 12:49. Highly accessed. [link] Risso D, Massa MS, Chiogna M, Romualdi C (2009). A modified LOESS normalization applied to microRNA arrays: a comparative evaluation. Bioinformatics, 25 (20):2685-91. [link] Bisognin A, Coppe A, Ferrari F, Risso D, Romualdi C, Bicciato S, Bortoluzzi S. (2009). A-MADMAN: annotation-based microarray data meta-analysis tool. BMC Bionformatics, 10:201. Highly accessed. [link] Chiogna M, Massa MS, Risso D, Romualdi C (2009). A comparison on effects of normalisations in the detection of differentially expressed genes. BMC Bionformatics, 10:61. Highly accessed. [link]

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